1. RNASeq workshop Jan 2019
2. Material

C3G Analysis Workshop Module: RNA-Seq

Date: 22-23 January, 2019 at 9:00 AM
Location: McGill McIntyre Building (3655 Promenade Sir-William-Osler, Montreal, QC H3G 0B1); Room 210/11
Instructors from C3G: Rola Dali, Hector Galvez, Eloi Mercier, Pierre-Olivier Quirion

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Preparation

• Compute Canada Account
• Software Installation
• CyberDuck Installation

Presentations

• Lect1: Intro
• Lect2: Intro to Unix
• Lect3: Intro to RNASeq
• Lect4: GenPipes Files
• Lect5: Recap
• Lect6: Differential Expression
• Lect7: The End!

Practicals

• Practical1: Intro to Unix
• Practical2: GenPipes Set Up
• Practical3: GenPipes Files
• Practical4: Mapping
• Practical5: Differential Expression
• Practical6: Visualization
• Practical7: GenPipes Progress

Extras

• mugqicValidator
• nanuq_example
• Resources Page
• Workshop Schedule
• Unix Cheat Sheet
• GenPipes RNASeq Workflow
• csvToreadset.R
• workshop.ini
• Homo_sapiens.GRCh38.genes.txt

Full Package

• RNASeq Test Dataset
• C3GAW_All_Material